Orthologous MAtrix
In today's world, Orthologous MAtrix is an issue that has become increasingly relevant in society. Since its emergence, Orthologous MAtrix has been the subject of debate and interest, generating conflicting opinions and arousing the curiosity of experts and laypeople alike. Whether due to its impact on daily life, its historical relevance or its influence in various areas, Orthologous MAtrix has established itself as a topic of global interest. In this article, we will explore the different facets of Orthologous MAtrix and discuss its importance in the current context.
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| Content | |
|---|---|
| Description | orthology inference among 1000 complete genomes. |
| Contact | |
| Laboratory | ETH Zurich |
| Authors | Christophe Dessimoz Adrian Schneider Adrian Altenhoff Gaston H. Gonnet |
| Primary citation | Altenhoff et al. |
| Release date | 2004 |
| Access | |
| Website | omabrowser |
| Download URL | http://omabrowser.org/All/download.html |
| Web service URL | wsdl |
| Miscellaneous | |
| Data release frequency | 2 releases per year |
OMA (Orthologous MAtrix) is a database of orthologs extracted from available complete genomes. The orthology predictions of OMA are available in several forms:
- OMA Pairs: for a given gene, a list of predicted orthologs in other species is provided.
- OMA Groups: a set of genes across different species which are all orthologous.
- OMA Hierarchical Groups: the set of all genes that have evolved from a single ancestral gene in a given taxonomic range.
- OMA Genome Pair view: the list of all predicted orthologs between two species.
See also
References
- ^ a b Altenhoff, Adrian M; Schneider Adrian; Gonnet Gaston H; Dessimoz Christophe (Jan 2011). "OMA 2011: orthology inference among 1000 complete genomes". Nucleic Acids Res. 39 (Database issue). England: D289-94. doi:10.1093/nar/gkq1238. PMC 3013747. PMID 21113020.
- ^ Altenhoff, Adrian M; Glover, Natasha M; Train, Clément-Marie; Kaleb, Klara; Warwick Vesztrocy, Alex; Dylus, David; de Farias, Tarcisio M; Zile, Karina; Stevenson, Charles; Long, Jiao; Redestig, Henning; Gonnet, Gaston H; Dessimoz, Christophe (2018). "The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces". Nucleic Acids Research. 46 (D1): D477–D485. doi:10.1093/nar/gkx1019. ISSN 0305-1048. PMC 5753216. PMID 29106550.
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